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Option Genomics/Bioinformatics Option  

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This option is offered within the following major(s):
Bioresource Research - College of Agricultural Sciences



Computational advances and the development of high throughput sequencing methods have led to a virtual explosion of genomics, proteomics, and metabolomics data, providing new approaches to problems in biosciences. The computer-aided analysis of these data with new tools from information science comprises the field of Genomics/Bioinformatics. The Genomics/Bioinformatics option examines the use of computational techniques to convert large amounts of information from DNA sequencing, DNA chips, and other high-throughput experimental methods into useful information that can be shared with other research scientists and medical professionals. The emphasis is on DNA and protein sequence alignment and analysis, and involves computational biology and biological statistics. Students will acquire skills preparing them for jobs or graduate programs in this new, rapidly growing field.



Genomics/Bioinformatics Option (29 credits):

Students are required to take one or two courses in each of four areas:
  1. Biochemistry/Molecular Biology
  2. Genetics/Organismal Biology
  3. Computer Science
  4. Statistics/Modeling.

In addition, students obtain depth by choosing one of these four areas as their area of emphasis and taking an additional 6 to 8 credits of upper-division courses in that area, plus additional upper-division electives.

Finally, students are required to do an internship in biocomputing, as a prerequisite to, or concurrent with starting, their research projects.

Mathematics:

Substitute MTH 231. Elements of Discrete Mathematics (4)
  and MTH 232. Elements of Discrete Mathematics II (4)
for MTH 251. *Differential Calculus (4)
  and MTH 252. Integral Calculus (4)

Required:

BRR 410. Internship (Biocomputing) (3)

1. Biochemistry/Molecular Biology:

Choose one course:
BI 314. Cell and Molecular Biology (4)
  or BB 331. *Introduction to Molecular Biology (3)

Students choosing the biochemistry/molecular biology emphasis choose 6 to 8 additional credits:
BI 315. *Molecular Biology Lab (4)[Terminated fall 2009]
  or BB 481. Biophysics (3)
  or BB 494. Biochemistry Laboratory (3) 
  or MB 310. Bacterial Molecular Genetics (3)
  or MB 311. ^Molecular Microbiology Laboratory: A Writing Intensive Course (3) 
  or equivalent upper-division courses approved by research mentor.

2. Genetics/Organismal Biology:

Choose one course:
CSS 430. Plant Genetics (3)
  or ANS 378. Animal Genetics (4)  
  or BOT 321. Plant Systematics (4)
  or FS 444. Forest Genetics (4) 
  or MB 302. General Microbiology (3)

Students choosing the genetics/organismal biology emphasis choose 6 to 8 additional credits:
MB 310. Bacterial Molecular Genetics (3)
  or MB 554. Genome Organization, Structure and Maintenance (4)
  or MB 668. Bioinformatics and Genomics (4)
  or equivalent upper-division courses approved by research mentor.

3. Computer Science:

CS 161, CS 162. Introduction to Computer Science I, II (4,4)

Students choosing the computer science emphasis choose 6 to 8 additional credits:
CS 261. Data Structures (4)
  or CS 325. Analysis of Algorithms (4)
  or CS 420. Graph Theory with Applications to Computer Science (3)
  or equivalent upper-division courses approved by research mentor to fulfill the computer science emphasis.

4. Statistics/Modeling:

Choose one course:
BEE 471. Biosystems Modeling Techniques (3)
  or CSS 590. Experimental Design in Agriculture (4)
  or ST 352. Introduction to Statistical Methods (4)

Students choosing the statistics/modeling emphasis will choose 6 to 8 additional credits:
ST 411, ST 412. Methods of Data Analysis (4,4)
  or ST 421, ST 422. Introduction to Mathematical Statistics (4,4)
  or ST 441. Probability, Computing, and Simulation in Statistics (4)
  or equivalent upper-division courses approved by research mentor.

Electives:

3 to 6 additional credits of upper-division courses approved by research mentor, for a total of 29 credits.





 
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